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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: DNMT1
wikigenes
PDBj
CellType: NCCIT
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX156110
GSM952455: UD-DNMT1 ChIP; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
DNMT1
Cell type
Cell type Class
Pluripotent stem cell
Cell type
NCCIT
Primary Tissue
Testis
Tissue Diagnosis
Teratoma
Attributes by original data submitter
Sample
source_name
UD-DNMT1_ChIP
cell type
embroynic cancer
cell line
NCCIT
cell status
undifferentiated
chip antibody
DNMT1
antibody source
Santa Cruz (sc-10219)
Sequenced DNA Library
library_name
GSM952455: UD-DNMT1_ChIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
21600000
Reads aligned (%)
98.2
Duplicates removed (%)
3.8
Number of peaks
404 (qval < 1E-05)
hg19
Number of total reads
21600000
Reads aligned (%)
97.5
Duplicates removed (%)
5.9
Number of peaks
609 (qval < 1E-05)
Base call quality data from
DBCLS SRA